site stats

Plantphonedb github

WebJan 2, 2024 · PlantPhoneDB in R Package index Search the Jasonxu0109/PlantPhoneDB package Vignettes README.md Functions 12 Source code 5 Man pages 6 CCI_circle: … WebOct 31, 2024 · PlantPhoneDB: a manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. Getting started README.md Browse package …

GitHub - Jasonxu0109/PlantPhoneDB: A manually curated …

WebCCI_circle: Network viewing of cell-cell communication CCI_network: Network viewing of cell-cell communication heatmap_count: The number of ligand-receptor interactions between pairwise... LR_pathway: Construction of intracellular signaling pathway LRscore: Score ligand-receptor interactions LRTargetFisher: Functional category enrichment … WebCase Studies — PlantPhoneDB-Tutorial v1.0.0 documentation Case Studies Edit on GitHub Case Studies Case1.ipynb was used to infer cell-cell communications from scRNA-seq datasets processed by using_example.ipynb. Case 1. Significant cell-cell interactions of Heat-Shocked Root Cells in Arabidopsis thaliana Case 2. life is good because human is great https://cakesbysal.com

Home — PlantPhoneDB-Tutorial v1.0.0 documentation - Read the …

WebAug 7, 2024 · 从结果可以看出，PlantPhoneDB可以预测出有显著通讯活性的AT1G28290-AT2G14890配体-受体互作对，该配体-受体互作对所调控的靶基因富集到核糖体通路。 热胁迫可能会引起核糖体暂停现象，这种热触发的 mRNA 降解似乎是植物在慢性热胁迫下适应和生存所必需的。 WebPlantPhoneDB Documentation!¶ Welcome! This is the documentation for PlantPhoneDB, a manually curated pan-plant database of ligand-receptor pairs infers cell-cell … WebOct 31, 2024 · PlantPhoneDB: A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. ( Plant Biotechnology Journal ; Impact Factor 13.263 … life is good beanie

PlantPhoneDB Documentation! — PlantPhoneDB-Tutorial v1.0.0 docum…

Category:PlantPhoneDB: A manually curated pan-plant database of ligand-receptor

Tags:Plantphonedb github

Plantphonedb github

Releases · Jasonxu0109/PlantPhoneDB · GitHub

WebJan 2, 2024 · Functional category enrichment analysis Description. Functional category enrichment analysis Usage LRTargetFisher(Targets, GeneSets, TotalGene) Arguments WebAbout — PlantPhoneDB-Tutorial v1.0.0 documentation PlantPhoneDB-Tutorial latest Overview Home Search Explorer Download References Document About Case Studies …

Plantphonedb github

Did you know?

WebJan 2, 2024 · expr: A data frame or matrix of n rows (genes) and m columns (cells) normalized by SCTransform(). LRdb: A dataset with ligand-receptor pairs, such as LR_pair_ath.RDa. WebDocument — PlantPhoneDB-Tutorial v1.0.0 documentation Document Edit on GitHub Document We provide the R script needed to reproduce the processed scRNA-seq datasets results of PlantPhoneDB. Quick Installation First, install devtools (for installing GitHub packages) if it isn’t already installed:

WebAug 12, 2024 · PlantPhoneDB v1.0.0 Pre-release. A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. Assets 5. WebIn conclusion, PlantPhoneDB provided researchers with an integrated resources to infer cell-cell communication from scRNA-seq datasets. COLLEGE OF THE ENVIRONMENT & ECOLOGY, XIAMEN UNIVERSITY...

WebBackground: In plants, the plasma membrane is enclosed by the cell wall and anchors RLK and RLP proteins, which play a fundamental role in perception of developmental and environmental cues and are... WebClone via HTTPS Clone with Git or checkout with SVN using the repository’s web address.

WebDownload scientific diagram Correspondence table containing the available L-R gene information for each organism For each detected CaH, gene annotation, enrichment analysis, tissue-or cell-type ...

WebJul 16, 2024 · PlantPhoneDB: A manually curated pan-plant database of ligand-receptor pairs infers cell–cell communication. Chaoqun Xu, Chaoqun Xu. Key Laboratory of the … mcshay homes alexandria vaWebJan 2, 2024 · lr: A data frame of the ligand-receptor interactions. objs: object Seurat object. CellA: Ligands cell. CellB: Receptors cell. neighbor: Represents the second-order neighbors of ligand-receptor pair in the signaling network.Default is 2. mcshay mock draft 2021life is good be happy